YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16549529
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHSLDRNQD GHIDVSEIQQ SFRALGISIS LEQAEKILHS MDRDGTMTID WQEWRDHFLL  60
   61 HSLENVEDVL YFWKHSTVLD IGECLTVPDE FSKQEKLTGM WWKQLVAGAV AGAVSRTGTA 120
  121 PLDRLKVFMQ VHASKTNRLN ILGGLRSMVL EGGIRSLWRG NGINVLKIAP ESAIKFMAYE 180
  181 QIKRAILGQQ ETLHVQERFV AGSLAGATAQ TIIYPMEVLK TRLTLRRTGQ YKGLLDCARR 240
  241 ILEREGPRAF YRGYLPNVLG IIPYAGIDLA VYETLKNWWL QQYSHDSADP GILVLLACGT 300
  301 ISSTCGQIAS YPLALVRTRM QAQASIEGGP QLSMLGLLRH ILSQEGMRGL YRGIAPNFMK 360
  361 VIPAVSISYV VYENMKQALG VTSR

Type	Start	End	Confidence
Cytoplasmic	1	249	0.67
Transmembrane Helix	250	271	0.78
Non-Cytoplasmic	272	291	0.89
Transmembrane Helix	292	314	0.82
Cytoplasmic	315	384	0.76