YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16549712, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	368	0.99
Transmembrane Helix	369	390	0.94
Cytoplasmic	391	398	0.86
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	444	0.92
Transmembrane Helix	445	466	0.88
Cytoplasmic	467	498	0.93
Transmembrane Helix	499	517	0.72
Non-Cytoplasmic	518	521	0.53
Transmembrane Helix	522	543	0.41
Cytoplasmic	544	563	0.51
Transmembrane Helix	564	585	0.89
Non-Cytoplasmic	586	590	0.52
Transmembrane Helix	591	613	0.81
Cytoplasmic	614	626	0.51
Transmembrane Helix	627	648	0.92
Non-Cytoplasmic	649	654	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFRTKLSVS WVPLFLLLSR VFSTETDKPS AQDSRSRGSS GQPADLLQVL SAGDHPPHNH  60
   61 SRSLIKTLLE KTGCPRRRNG MQGDCNLCFE PDALLLIAGG NFEDQLREEV VQRVSLLLLY 120
  121 YIIHQEEICS SKLNMSNKEY KFYLHSLLSL RQDEDSSFLS QNETEDILAF TRQYFDTSQS 180
  181 QCMETKTLQK KSGIVSSEGA NESTLPQLAA MIITLSLQGV CLGQGNLPSP DYFTEYIFSS 240
  241 LNRTNTLRLS ELDQLLNTLW TRSTCIKNEK IHQFQRKQNN IITHDQGYSN FSSSMEKESE 300
  301 DGPVSWDQTC FSARQLVEIF LQKGLSLISK EDFKQMSPGI IQQLLSCSCH LPKDQQAKLP 360
  361 PTTLEKYGYS TVAVTLLTLG SMLGTALVLF HSCEENYRLI LQLFVGLAVG TLSGDALLHL 420
  421 IPQVLGLHKQ EAPEFGHFHE SKGHIWKLMG LIGGIHGFFL IEKCFILLVS PNDKKSPEDS 480
  481 QAAEMPIGSM TASNRKCKAI SLLAIMILVG DSLHNFADGL AIGAAFSSSS ESGVTTTIAI 540
  541 LCHEIPHEMG DFAVLLSSGL SMKTAILMNF ISSLTAFMGL YIGLSVSADP CVQDWIFTVT 600
  601 AGMFLYLSLV EMLPEMTHVQ TQRPWMMFLL QNFGLILGWL SLLLLAIYEQ NIKI