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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: asic-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNSLKRAL ELDVVDFAEH TSAHGIPRAY VSTGWRRYMW LLCFLFCLSC FGHQAYLIVE  60
   61 RFNRNDIIVG VEIKFEEIKF PAVTICNMNP YKNSAARELG AIRNAIEAFE LAIDKSDGNA 120
  121 HSKRKKRSAN SKMVPIDLLC KEEHGMFTAH DYGHVECVSR VFPMPTNQRQ AKHFTDWSTC 180
  181 VTFEDMSKVG DTDDDEIFWN CHQRKDWTHK ICHLAEGSNQ LKTCKCFEDT CVSDEVTKQL 240
  241 VWPLQLSKNG TKLCISPESS GPRYCASAQK FQVSTCSNCD WLGKCEESDD MDLEEEIDSK 300
  301 TCICHHGNCF QIKGNVKKRK RRTPERKVHE RLLSRYEGLL AVYSHCNCTK QHGCVSTSVP 360
  361 DMDLENSNKT CLCFYNKKNE QIWPCYKEPE WEERKCSRCN TMGDCVYSDK PKKQTISCLC 420
  421 ATPIKMCVRI DPPQTNDTSL DDRVVKFWDI QPSTTMSPIV KKKEERDKAY GYTGVKDRIA 480
  481 LRAKAMENMI FAVDALTEEE KWKISYNKSD FIMKCSFNGR ECNVKHDFVE YLDPTYGACF 540
  541 TYGQKLGNNT NERSGPAYGL RLEVFVNVTE YLPTTEAAGV RLTVHATDEQ PFPDTLGFSA 600
  601 PTGFVSSFGI KLKSMVRLPA PYGDCVREGK TEDFIYTQKA YNTEGCQRSC IQKHLSKTCG 660
  661 CGDPRFPPYR ESKNCPVDDP YKRECIKNEM HVATRDSKKL GCSCKQPCNQ DVYSVSYSAS 720
  721 RWPAIAGDLS GCPLGMAAHH CLNYKREQGS MIEVYFEQLN YESLLESEAY GWSNLLSDFG 780
  781 GQLGLWMGVS VITIGEVACF FFEVFISLIS SNRTKRRPAR KSFSSSLRCS TDYNLNKDGF 840
  841 NLDN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle