YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39859
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.78
Transmembrane Helix	37	57	0.92
Cytoplasmic	58	84	0.88
Transmembrane Helix	85	106	0.83
Non-Cytoplasmic	107	109	0.48
Transmembrane Helix	110	128	0.87
Cytoplasmic	129	137	0.70
Transmembrane Helix	138	158	0.94
Non-Cytoplasmic	159	177	0.88
Transmembrane Helix	178	198	0.95
Cytoplasmic	199	205	0.82
Transmembrane Helix	206	227	0.93
Non-Cytoplasmic	228	235	0.79
Transmembrane Helix	236	255	0.96
Cytoplasmic	256	266	0.75
Transmembrane Helix	267	287	0.91
Non-Cytoplasmic	288	297	0.64
Transmembrane Helix	298	318	0.86
Cytoplasmic	319	369	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVASSSQV ILPVAADSSS IGSVNTMDEV HYASTDFYIG LGLAVSSSLF IGSSFIIKKK  60
   61 ALLKLASGDT SQRASEGGYG YLREWMWWMG VITMGIGEAC NFAAYAFAPA SLVTPLGALS 120
  121 VIVTAILSSR MLNERLNLLG SIGCALCLLG STVIVIHSPK EEEVGSMADL ALKMKDAGFL 180
  181 IYVILIILAT GFIVVYVAPR YGHSNILVYI SVCSLIGSLS VLSETLAGNQ QFTNWLTYFW 240
  241 LASVAMCVSV QLIYLNKALD IFNTSMVTPI YYVFFTTFVI LASSILYKEW SCLGASDVIG 300
  301 NFVGFLTTII GIFQMQLFRD VNISLYQVQR LVSRPSATLA NADFSSSSTN LVDDYCMRQS 360
  361 NSNRRMVYT