YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39813
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.91
Transmembrane Helix	28	48	0.88
Non-Cytoplasmic	49	81	0.88
Transmembrane Helix	82	102	0.94
Cytoplasmic	103	111	0.72
Transmembrane Helix	112	131	0.93
Non-Cytoplasmic	132	140	0.68
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	169	0.83
Transmembrane Helix	170	192	0.90
Non-Cytoplasmic	193	200	0.83
Transmembrane Helix	201	221	0.95
Cytoplasmic	222	276	0.93
Transmembrane Helix	277	297	0.86
Non-Cytoplasmic	298	330	0.92
Transmembrane Helix	331	353	0.92
Cytoplasmic	354	361	0.78
Transmembrane Helix	362	383	0.91
Non-Cytoplasmic	384	389	0.74
Transmembrane Helix	390	411	0.90
Cytoplasmic	412	418	0.88
Transmembrane Helix	419	441	0.91
Non-Cytoplasmic	442	449	0.84
Transmembrane Helix	450	470	0.95
Cytoplasmic	471	492	0.93
Transmembrane Helix	493	517	0.83
Non-Cytoplasmic	518	537	0.85
Transmembrane Helix	538	557	0.92
Cytoplasmic	558	571	0.92
Transmembrane Helix	572	592	0.96
Non-Cytoplasmic	593	600	0.69
Transmembrane Helix	601	621	0.92
Cytoplasmic	622	630	0.80
Transmembrane Helix	631	654	0.88
Non-Cytoplasmic	655	662	0.86
Transmembrane Helix	663	685	0.93
Cytoplasmic	686	703	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDYKVHST LPHIPKTPSF AFWNRTRIYI MVLTLACLTF IQINTVIFNF TVICMEDIVE  60
   61 DYNLLTNYTG THWFQRTTEK SLLFSGAAIG GLIGLIPSVP LINSIGLRNF QTISGLISAL 120
  121 GALLFPLAVS IDFYSSFLCR VLQGMGSSII FTSVGVVPGV WAPSNETNTF TAILSCALQL 180
  181 GNIICMPVSG FLCESSLGWR SIYYLFGGLT AIIFIMFWFT YTDDPKLHRL TEIQILKIHF 240
  241 FGKNVSENCE VHPTTSDGRL PKIRKTSSFV FWNKTRMFIM ILTLACLTFI QINTLLFNFT 300
  301 VICMEDVVEN YNLLTNYTAT HWFQRNTEKS LLFSGVAIGG LIGLIPSVPL INALGLRNVQ 360
  361 TISGLISAFG ALLFPLAVSI GFYTTLLCRI LQGMGSAVMF TSVGVVPNVW APRNEANTFM 420
  421 AILSCALQLS NIICMPVSGL LCESALGWRS IYYLFGGLTF IMFIVFWISY KDDPKMYRKR 480
  481 NLKKSPAAKL SRYLAICTDP TVLITWITCF GGFVGLYSLS LYGPTYLREI LKFDVRETGF 540
  541 LSALPFILSA IIKFAAGKIS DKLSFLSEKS RFVFFAATSQ IGFVAGLLVM AFTTNRLIAQ 600
  601 IAFNFAIVSS GMNVMGVFKV VQLRCLQHVH FAIAVISFTT YLVQFLAPVI VGIICPDNTP 660
  661 AQWTTLFLVI SAIIIVCTVG FPFLTKSDAA DYTKKKTVES CRS