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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: abt-2
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSEEMLQN ELLLPAHSSA SSDALSDTKE FSEAGLGMVG FWRQLNFLLW KCVLVRRRQK  60
   61 FWLAVELIVP CILFIIIALV RTKDFSEASP QCHYDSKGML SAGVLPFIHS FFCSFSNRCN 120
  121 AAPTTGDEKH FLFNDDGEHT RNESIIVDAI YYSSLQLRWI GNNPKKFEDL TKGAAEIVHW 180
  181 LAGKSLQSTA IVRLGDLFDE PIRQNLTKVL NTTGLKMETA EKLLNARLEP GAIETFQTLR 240
  241 TEISFTDLFF SENPLFCDER MFESTFSFEK GQELTNSEKD ELCSVLSLTT LMDFSGYMSE 300
  301 VRLPTLSRLR VTPFISSFQS VFEPTLIFAQ KYGNYSTDQL LLALFCGEDP RATIEQTINP 360
  361 NSDKNVDTPF EKLRKQVIKF IQTVTPGKEQ EKNSTCTPVP HHQDMNCSSL ESPILMKVRE 420
  421 ALSGYILVTP DNPVTRRVVD RLNIPLRDIE HLRNLLYTYP SDALEFQDRL HASDLWPASQ 480
  481 KLLHFIKVYK NGQNQLNTRT IHFFLEHLFA PSSDEYSFGT YTKNITEIAN KYTGCFLLDR 540
  541 FRFVTDEKEL ETNAVCLMDT HQYFTGIVFN IDSNATEFDG FTTYKIRHYP EMVDSTTSFM 600
  601 DSKSNPFSRD KPLIDLKYIT FGFSFLQESI DRAIMSELTN QTDANLGVYA QQEPYPCTVK 660
  661 DTFNVALFMP LFLLISFIFP SALLVKNIVY EKEQKIKEQM RAMGLGDAVH FISWGLISLV 720
  721 LNFISVLIIS IISKVAKIFD YTDYTLLLFV LILFLFSSIA MSIFFSTLFT NANIATAATC 780
  781 VLWFVFFIPF QLLRTDRISS PTFNRISLIL PPTAMGHCFK LLESFNAMER ATWSDLWEMN 840
  841 NPVLGISVEL CMIMLVVDTA VFLILAWYIS AVAPGDFGVR QPLWFPFTLK YWAPGLYKNR 900
  901 VEFVDDEHFD TIPNSDSFDS EPTNLTLAVH INSMSKVYEN GTKALDCLNL RLYEGQITGL 960
  961 LGHNGAGKTT TMSILCGLYA PSSGTAKIYQ RDIRTDLRRV RDVLGICPQH NVLFSHLTVS1020
 1021 EQLRLFAALK GVPDSELTSQ VDEILASVSL TEKANKLAST LSGGMKRRLC IGIAFIGGSR1080
 1081 FVILDEPTAG VDVTARKDIW KLLQRNKEGR TILLSTHHMD EADVLSDRIA ILSQDFEKPD1140
 1141 LLDGKRLIFQ HFYALLVCRI NYTLKSKRTF LFQVIIPLFL LALAELFVLL QVSTARPDLM1200
 1201 VSMPPLPLET SIMGNHSDFY VNSWDTAENS TANDILHAMF SSPGTGPRCA KDVPNDLLDT1260
 1261 MRRELMFRNR YGFGRNKPAP GVDKDSVDNE YQCQNIQGEF DYTEDISNAT YNAPIYCGCE1320
 1321 DFGWNCTLED WKWNETNWLR LNTTDRIFDL TGRNLTQFRL ITRFAQLANT TAPFFLGGFS1380
 1381 LGHVNQRAQS QADIDTSKRG WLETIKDIAQ SMRIINLNTT GIEPATPKVL DPFAQNITLN1440
 1441 QVVNDLLQNL DVRENVKVWF NNKIWPGFPI ASNILSNALL RQEDYAIDPE DLGILTMNHP1500
 1501 MNKTISQTLD QNALKFTQAL AVFRITILLL VLSMIPAGFT VYLVEDRICE ALHLQLVGGL1560
 1561 RKVTYWVTSY LYDMVVYTLV IIVIMLIYLC FRVSDFTADG ATFFAFLLLF FVHGMSTILY1620
 1621 AYVFQKAFSV AALSFVLIAI GSYFVGIVCA LTVIMLESLM VQDPSLIPAH TVCSIVFLVL1680
 1681 PQYNLGIAIF RGLMIYQVRA IGSNFLQQMN RPDMINQLPL PSLLAFDQMG IHIMCLFIHV1740
 1741 IIATICLIFS QMDEFGFVRK RERNLTDAMM LREPSTCDDE DVVKERQRVD AIPMDSSDNH1800
 1801 ALIVRNLAKA YNPELLAVKG ISFAVEPGEC FGLLGLNGAG KTTTFAMLTA KIRPGHGSIE1860
 1861 MQNTRINTGS FSDVRNFQQL GYCPQFDALN MKLSTRENLK FYARIRGIVP TQIDSIIDRL1920
 1921 LIALHLRPYA NTQTSSLSGG NRRKLSVAVA LVSQPSLIFL DEPSAGMDPG SQQFLWKVIE1980
 1981 RLCKSGKAVV LTSHSMEECE ALCTRIAIMD RGRIRCLGGK QHLKSKYGKG SMLTMKMGKD2040
 2041 ENAKEIAGIM RSKLGDGSRV EAIHCSTIFI HIEQGTASVA RVLEIVNQVK KMYDVDDFTL2100
 2101 TQSTLDNVFQ SIAESDNLSE EGHHGTLSSI NRNNTASTYV IHGSDQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle