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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|112823392, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIKNKFKQ VAMIGLFSLA QFALAGAILT ENDVKMRLDE IKKIEHPQQE DKSAVQNLEE  60
   61 TLFLLGKIAK QKEDNLKLQK LIQDAPNEQK NIREEITTLK EAFVVRDFDN LSIEQLEDNL 120
  121 AKIQSELQQV QADLVQANAQ LVNQHSATER AQSALSANIV RTQEIDKLSF SVDIVPEEQN 180
  181 KLATESALIE LQNDYNQTVL QGNNELTALY TLQLELKNLV QQHLQATQTA LQTEINRRKL 240
  241 VQTEQHVEQL KQIQKEAEGN PLLVQQQQIN IQIGQDLVEQ TTKLNALSQD NLRIKSVLDN 300
  301 LQQTERNINE QISALQGTLV LSRIINKQKQ LLPHDRMITG LSNQIADLRV KIFDLTELRD 360
  361 SLYDIDGYIS NIERKQGVTF GIAEHAQLTK ILRERQKGIS DLVSILNDQL NLSINIELNQ 420
  421 KQVNLISDTL QEKLQQQSFW VKSNTPIDLD WVKHFPSLLK IELEDIRTQF NFNNWQDNII 480
  481 SATALIVFLL SIAFFISWRK EKIKQRLNYI NSKINTLQED RQLYTPEAVF WTIILCLPMT 540
  541 LVVLVGLIVI TFICFNDPEK FWLWSVRMSG YWWLFAFMLA MLRPNGLAYR HFSMPKHNVE 600
  601 LFSNVMKRSV WITVLWLNAS MFTYLDGGIA NDVIGQLMTI AVLVISLFII GPRMRYAVQA 660
  661 YEKNSEKKPF LKVFRIVLLL SPIILIVLVV LGYYYTTLNL MDHLMSSYFA LMIWIVIRNI 720
  721 VYRGFTISAR RLAYRRLQEK QKKTQVQSQD VVDKEEFNLN TQEEVLAISA VKDQVLRVMD 780
  781 LVLLVGLIGM FYWVWSDLIT VAYYLEGVTL WKQTAITEVG TVIETITLWN LLLALIILGI 840
  841 TYALVRNIGG VLEVLIFSRV NFSQGTPYTI TTLLIYFIIA IGSAMAFSTL GMSWSKLQWL 900
  901 FAALSVGLGF GLQEIFANFV SGIIILFERP VRIGDFVTID NFSGTVSKIR IRSTTIIDSD 960
  961 KKEVIVPNKA FVTERIVNWA LTNSMTRVVI GVGVAYGSDL ELVRKLLLQA AYETPTVLKE1020
 1021 PEPSAYFIAF GASTLDHELR VYVGKLSDRM TTQDFLNRRI NELFAQHNIE IAFNQLDVFI1080
 1081 KNQTTNEEVK VLSENLQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle