YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124020689
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDVFGSVKG LLKLDSVCID NNVFRLHYKA TVIILIAFSL LVTSRQYIGD PIDCIVDEIP  60
   61 LAVMDTYCWI YSTFTIPNRL IGRVGKDYVQ PGVGPHVEGQ DEVKYHKYYQ WVCFVLFFQA 120
  121 ILFYVPRYLW KTWEGGRIKM LVLDLNCPIV EDECKSGRKK LLVDYFHTNL HTQNFYAFRF 180
  181 FICEVLNFIN VVGQIFFMDF FLDGEFSTYG SDVVSFTEME PEERVDPMAR VFPKVTKCTF 240
  241 HKYGPSGTVQ KFDGLCVLPL NIVNEKIYVF LWFWFMILSI LSGISLLYRM AVVAGPRVRL 300
  301 YLLRARSRLA PQEQIEAVAR KLQIGDWFVL YQLGKNIDPL IYKELMTELA EKFEGNDKV

Type	Start	End	Confidence
Cytoplasmic	1	25	0.79
Transmembrane Helix	26	43	0.63
Non-Cytoplasmic	44	107	0.76
Transmembrane Helix	108	130	0.75
Cytoplasmic	131	175	0.92
Transmembrane Helix	176	198	0.83
Non-Cytoplasmic	199	269	0.92
Transmembrane Helix	270	292	0.90
Cytoplasmic	293	359	0.94