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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109508646, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLRVARLK PLELLLPLLP LLLGTRPHGS PGPLQCYSVG PLGILNCSWE PLGDLETPPV  60
   61 LYHQSQKYHP NRTKEVKVPS RQSWVTIPRK QFTTADELLI WGTQEGQLLW PPVSVNLETQ 120
  121 MKPDTPQIFS DVDFFKEETL EAIVQWEPPK WPLHKVLICQ FRYKKCQTKE WTQLEPQLKT 180
  181 DLMTPIEMQN LEPGTGYQVS GRCQVENGYP WGEWSPDLSF PTPFLAPEDV WVSGTICETS 240
  241 GKPAALLFWK DPGPCVQVTY TVWLGVGDVT TTQEEVPCCK SPIPAQIEWA VVSTGNQTSW 300
  301 MPLTNLSLVC LAPESAPCDV RVSSTDGSPG IKVTWKQETG KPWAYVVDWA QDGDSLDKLN 360
  361 WTRLPPENLS TLLSGDFQAG VPYRITVTSV YSGGLAAAPS VWGFIKELAP LAGPAVWRLP 420
  421 DDPTGTPVVA WGEVPRHQLR GQATHYTFCR QSRGIPTICM NVSSQTKTVT LPNLYSGPFK 480
  481 LWVMVSTAAG QGPPGPSLSL HIPDNRIRWK FLPWVLSLWG LLLVGCGLSL APPSNMFATG 540
  541 SLLARCLYQR HKLLPQWIWE RVPDPANSNS GQPYIKEVSL PQPPKDGPIL EVEEMELQPV 600
  601 TESPKASVPL YSGYEKHFLP TPEELGLLRP PAPRVLDCSA SG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle