YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109494930, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSLNEWLW QETYWLPPNV TWAQLEDRDG LVFAHPHHVL AALPIALVLV AMRIIFERFV  60
   61 ALPLSRWMGV QDPIRRKIKP NPVLEKYFLR MKQRPVETQM VLLASQCGLT LRQIQRWFRR 120
  121 RRNQDRPCLS KKFCEASWRF VFYLCSFVGG TSILYHESWL WTPALCWENY PHQTLNLALS 180
  181 WWYLLELGFY ISLLITLPFD IKRKDFKEQV AHHFVTVGLI VFSYSVNLLR IGSVVLLLHD 240
  241 CSDYLLEGCK MLNYAHFQRG CDTLFIIFSL VFFYTRLVFF PTEVIYTAVF DSIKNSGPFF 300
  301 GYYFFIVLLG MLQILHVYWF CLILRMICSF LRKGQMREDI RSDVEESDSS DDEAVSEGPQ 360
  361 LKNGMARGSR AAITNGPRSR AAACLTNGHT RAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.80
Transmembrane Helix	37	56	0.90
Cytoplasmic	57	139	0.87
Transmembrane Helix	140	159	0.91
Non-Cytoplasmic	160	178	0.92
Transmembrane Helix	179	199	0.92
Cytoplasmic	200	259	0.62
Transmembrane Helix	260	280	0.73
Non-Cytoplasmic	281	299	0.69
Transmembrane Helix	300	323	0.89
Cytoplasmic	324	393	0.76