YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109484829, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAARRRQL PGAAGGPGVA FLQARHGSAK AEDKDRTAPF HFDLWFYFTL QNWVLDFGRP  60
   61 IAMLVFPIQW FPLNKPSVGD YFHMAYNIIT PFLLLKLMER SPRTLPRSII YVSIITFIMG 120
  121 ASIHLVGDSV NHRLLFSGYQ HHLSVRENPI IKNLKPETLI DSFELLYYYD EYLGHCMWYI 180
  181 PFFLILFMYF SGCFTTSKAE SHMPGPALLL VVPSGIYYWY LVTEGQIFIL FIFTFFAMLA 240
  241 LVLHQKRRRL LLDSNGLFLF CSFALTLLLV ALWVAWLWND PVLRKKYPGV IYVPEPWAFY 300
  301 TLHVSNQQ

Type	Start	End	Confidence
Cytoplasmic	1	51	0.80
Transmembrane Helix	52	71	0.56
Non-Cytoplasmic	72	80	0.58
Transmembrane Helix	81	98	0.70
Cytoplasmic	99	107	0.88
Transmembrane Helix	108	127	0.95
Non-Cytoplasmic	128	174	0.96
Transmembrane Helix	175	194	0.93
Cytoplasmic	195	201	0.82
Transmembrane Helix	202	221	0.90
Non-Cytoplasmic	222	226	0.81
Transmembrane Helix	227	244	0.97
Cytoplasmic	245	255	0.83
Transmembrane Helix	256	277	0.94
Non-Cytoplasmic	278	308	0.95