YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCDS8598.1_1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPFYNCWRT GLLLLLLLAV AVRESWQAEE KTCDLVGEKG KESEKELALV KRLKPLFNKS  60
   61 FESTVGQGSD TYIYIFRVCR EAGNHTSGAG LVQINKSNGK ETVVGRLNET HIFNGSNWIM 120
  121 LIYKGGDEYD NHCGKEQRRA VVMISCNRHT LADNFNPVSE ERGKVQDCFY LFEMDSSLAC 180
  181 SPEISHLSVG SILLVTFASL VAVYVVGGFL YQRLVVGAKG MEQFPHLAFW QDLGNLVADG 240
  241 CDFVCRSKPR NVPAAYRGVG DDQLGEESEE RDDHLLPM

Type	Start	End	Confidence
Signal Peptide	1	27	0.97
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	189	0.99
Transmembrane Helix	190	211	0.80
Cytoplasmic	212	278	0.86