YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108794746, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.49
Transmembrane Helix	47	73	0.76
Cytoplasmic	74	114	0.51
Transmembrane Helix	115	138	0.85
Non-Cytoplasmic	139	144	0.44
Transmembrane Helix	145	169	0.82
Cytoplasmic	170	176	0.37
Transmembrane Helix	177	199	0.82
Non-Cytoplasmic	200	242	0.45
Transmembrane Helix	243	263	0.84
Cytoplasmic	264	270	0.87
Transmembrane Helix	271	292	0.92
Non-Cytoplasmic	293	301	0.78
Transmembrane Helix	302	321	0.94
Cytoplasmic	322	331	0.92
Transmembrane Helix	332	355	0.91
Non-Cytoplasmic	356	393	0.93
Transmembrane Helix	394	414	0.92
Cytoplasmic	415	421	0.89
Transmembrane Helix	422	439	0.86
Non-Cytoplasmic	440	442	0.47
Transmembrane Helix	443	465	0.74
Cytoplasmic	466	518	0.73
Transmembrane Helix	519	538	0.91
Non-Cytoplasmic	539	805	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHHTASDC KHKASSNAGG SVSGNGRPNS PAGCGGGGLS GGLTQPAGWQ SLLSFTILFL  60
   61 AWLAGFSSRL FAVIRFESII HEFDPWFNYR STHHLTTNGF YEFLNWFDER AWYPLGRIVG 120
  121 GTVYPGLMVT AGLIHYILNL LHVTVHIRDV CVFLAPVFSG LTAISTFLLT RELWNQGAGL 180
  181 LAACFIAIVP GYISRSVAGS FDNEGIAIFA LQFTYYLWVK SVKTGSVFWT IGCCLSYFYM 240
  241 VSAWGGYVFI INLIPLHVFV LLLMQRFSRR LYIAYSTFYI VGLVLSMQIP FVGFQPIRTS 300
  301 EHMAAAGVFA LLQAYAFLQY LKDRLTRQEF QTLFFLGVSL AAGVVFLTVI YLTYTGYIAP 360
  361 WSGRFYSLWD TGYAKIHIPI IASVSEHQPT TWVSFFFDLH ILVCTFPAGL WFCIKNINDE 420
  421 RVFVALYAIS AVYFAGVMVR LMLTLTPVVC MLSAIAFSSV FEHYLGDDMK RENPPAEDSS 480
  481 DEDDKRNQGN LYDKAGKVRK HVSEQDRPEE GLGPNIKSIV TMLMLMLLMM FAVHCTWVTS 540
  541 NAYSSPSVVL ASYNHDGSRN ILDDFREAYY WLRQNTDEHA RVMSWWDYGY QIAGMANRTT 600
  601 LVDNNTWNNS HIALVGKAMS SNESAAYEIM KSLDVDYVLI IFGGVIGYSG DDINKFLWMV 660
  661 RIAEGEHPKD IRESDYFTPQ GEFRVDKAGS PTLLNCLMYK MSYYRFGEMQ LDFRTPPGFD 720
  721 RTRNAEIGNK DIRLKHLEEA FTSEHWLVRI YRVKKQENRQ ALDHKLRNIA AKQKYTSKKT 780
  781 AKRKRGYIKN KLALKKGKKL NKKSV