YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94392706
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGPWAPDWS TASQTLLHAG GTDWFGTVQN DNHHASHGHH NSHHPQHHHH HHHHHHPPPP  60
   61 APQPPPPPPQ QQQQQPPPAP QPPQARGAPA ADDDKGPQPL LLPPSTALDG AKADALGAKG 120
  121 EPGGGPAELA PVGPDEKEKG AGAGGEEKKG AGEGGKDGEG GKEGDKKNGK YEKPPFSYNA 180
  181 LIMMAIRQSP EKRLTLNGIY EFIMKNFPYY RENKQGWQNS IRHNLSLNKC FVKVPRHYDD 240
  241 PGKGNYWMLD PSSDDVFIGG TTGKLRRRST TSRAKLAFKR GARLTSTGLT FMDRAGSLYW 300
  301 PMSPFLSLHH PRASSTLSYN GTTSAYPSHP MPYSSVLTQN SLGNNHSFST ANGLSVDRLV 360
  361 NGEIPYATHH LTAAALAASV PCGLSVPCSG TYSLNPCSVN LLAGQTSYFF PHVPHPSMTS 420
  421 QTSTSMSARA ASSSTSPQAP STLPSILQLL PDRRKSPEEN LHSPSKKQGS ARCYRKAAED 480
  481 LRTVNTLTRR SPHPVRALFP QFLWLRQAMV STGLSGSGAG RVQSHLREGD FLVSQRRKKK 540
  541 SREMSTVLGL TLSLLGIAQF PALEISGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	502	0.88
Transmembrane Helix	503	523	0.63
Cytoplasmic	524	543	0.77
Transmembrane Helix	544	563	0.82
Non-Cytoplasmic	564	568	0.82