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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125591633, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVMSHLLLH GGVLLLLLAA AAVQAQRVAT KTDPTEAAAL NAVFAKLGQQ ASLSTATWNI  60
   61 SGDPCTGAAT DGTPIDDNPN FNPAIKCDCT FQNNTVCRIT KLKIYALDVP GTIPQELRNL 120
  121 TRLTHLNLGQ NTLTGPLPSF IGELTNMQNM TFRINSLSGP IPKELGNLTN LVSLGLGSNR 180
  181 FNGSLPSELG NLDKLQELYI DSAGLSGPLP SSFSKLTRMQ TLWASDNDFT GQIPDYIGNW 240
  241 NLTDLRFQGN SFQGPIPSAL SNLVQLSSLI LRNCKISDNL ASIDFSKFAS LNLLDFSYNQ 300
  301 LSGNFPPWAS GKNLQLNLVA NNFVIDSSNN SILPSGLACL QRNTPCFLGS PQSSSFAVDC 360
  361 GSNRLISASD NLRYQTDDAS LGPASYSVTG APTWGVSNVG KFVDAPNGSY IIYSSRQFQN 420
  421 TLDSELFQTS RMSPSSLRYY GIGLENGNYT VTLQFAEFGI EDTQTWKSLG RRVFDIYLQG 480
  481 ERQEKNFDIR KAAGDKSYTV VKKSYKVPVT KNFLEIHLFW AGKGTCCIPG QGYYGPTISA 540
  541 LSVTPAVLGL VALVGIFMWR QKRRKLTLEQ QELYSIVGRP NVFSYSELRS ATENFSSSNR 600
  601 LGEGGYGAVY KGKLNDGRVV AVKQLSQTSH QGKKQFATEI ETISRVQHRN LVKLYGCCLE 660
  661 GNNPLLVYEY MENGSLDKAL FGIEKLNIDW PARFDICLGI ARGLAYLHEE SSIRVVHRDI 720
  721 KASNVLLDAN LNPKISDFGL AKLYDDKKTH VSTKVAGTFG YLAPEYAMRG HMTEKVDVFA 780
  781 FGVVLLETLA GRPNYDDTLE EDKIYIFEWA WELYENNNPL GIVDPNLREF NRAEVLRAIH 840
  841 VALLCTQGSP HQRPPMSRVV SMLTGDTEVT DVLMKPSYIT EWQIKGGNTS FANSAVRGQS 900
  901 SSAPGSTSQQ ASSVFLNSII QEGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle