YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FFAR4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPECAQTTG PGPSRTPDQV NRTHFPFFSD VKGDHRLVLS VLETTVLGLI FVVSLLGNVC  60
   61 ALVLVVRRRR RGATVSLVLN LFCADLLFTS AIPLVLVVRW TEAWLLGPVV CHLLFYVMTM 120
  121 SGSVTILTLA AVSLERMVCI VRLRRGLSGP GRRTQAALLA FIWGYSALAA LPLCILFRVV 180
  181 PQRLPGGDQE IPICTLDWPN RIGEISWDVF FVTLNFLVPG LVIVISYSKI LQITKASRKR 240
  241 LTLSLAYSES HQIRVSQQDY RLFRTLFLLM VSFFIMWSPI IITILLILIQ NFRQDLVIWP 300
  301 SLFFWVVAFT FANSALNPIL YNMSLFRSEW RKIFCCFFFP EKGAIFTETS IRRNDLSVIS 360
  361 T

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.96
Transmembrane Helix	45	66	0.92
Cytoplasmic	67	76	0.83
Transmembrane Helix	77	97	0.94
Non-Cytoplasmic	98	112	0.83
Transmembrane Helix	113	134	0.92
Cytoplasmic	135	155	0.87
Transmembrane Helix	156	177	0.92
Non-Cytoplasmic	178	208	0.92
Transmembrane Helix	209	231	0.91
Cytoplasmic	232	265	0.95
Transmembrane Helix	266	289	0.91
Non-Cytoplasmic	290	300	0.81
Transmembrane Helix	301	321	0.93
Cytoplasmic	322	361	0.95