YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91689701, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	28	0.94
Non-Cytoplasmic	29	34	0.82
Transmembrane Helix	35	56	0.88
Cytoplasmic	57	61	0.68
Transmembrane Helix	62	80	0.89
Non-Cytoplasmic	81	86	0.72
Transmembrane Helix	87	107	0.94
Cytoplasmic	108	113	0.77
Transmembrane Helix	114	132	0.92
Non-Cytoplasmic	133	160	0.88
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	206	0.89
Transmembrane Helix	207	229	0.90
Non-Cytoplasmic	230	247	0.87
Transmembrane Helix	248	273	0.87
Cytoplasmic	274	288	0.82
Transmembrane Helix	289	307	0.88
Non-Cytoplasmic	308	594	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIMQNKFF WLFLVVLFAL PVLPQPIHVP EYWVTLLNYI GLYSIVAIGL VLLTGIGGMT  60
   61 SFGQAAFVGI GAYATAYLTT QYGISPWFAL IVGVVVTALI ALMLGLVTMR LSGHFLPLGT 120
  121 IAWGLALFYL FGNLEMLGKY DGINGIPVLN VFGINLESGR HIYYLIWVVV LGAVISVQNL 180
  181 LNSRPGRAIR ALRGGGMMAE AMGVNTAWMR VVIFVYAAVL ASISGFLYAH LQRAVNPTPF 240
  241 GLNHGIEFLF MAVVGGVSHV WGAVLGAAIL TVLQDYLQTL LPKLLGENGN FEVIVFGVLM 300
  301 VLLLQYARQG VWPFVARFFP KGPRAHLADH AEPLPQRSKP TAGENLLTVN KARKQFGGLV 360
  361 AVNDVSFEVK AGQIIGLIGP NGAGKSTTFN LVTGVLQATS GEITFRGERI DSLTSREIVK 420
  421 RGIGRTFQHV KLLPGMTVLE NVAIGAHLRG QAGVWRSVVR LNGAEEARLM AEAARQIRRV 480
  481 GLEQHMYDEA GSLALGQQRI LEIARALCCD PTLLLLDEPA AGLRYQEKLQ LADLLRRLKA 540
  541 EGMSVLLVEH DMDFVMNLTD RLVVMEFGTR IAEGLPQDVQ QDPAVLEAYL GGVE