YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91785622, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSLPPARH AQSARMSGIA PTKVISTVVR ALRRVAPVAL PALMLALPTL SFAQAAGLPA  60
   61 FNTSPGPNGG TTYSLSVQTM LLLTMLSFLP AMVLMMTSFT RIIIVLSLLR QALGTTTTPP 120
  121 NQVLVGLALF LTLFVMSPVL DKAYTDGYKP FSDGTIPMET AVNRGLAPFK TFMLRQTRES 180
  181 DLALFARISH AAPMQGPEDV PLSLLVPSFV TSELKTGFQI GFTIFIPFLI IDMVVASVLM 240
  241 SMGMMMVSPA TISLPFKLML FVLVDGWQLL LGSLAQSFV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.83
Transmembrane Helix	38	58	0.81
Non-Cytoplasmic	59	79	0.87
Transmembrane Helix	80	103	0.86
Cytoplasmic	104	120	0.77
Transmembrane Helix	121	140	0.80
Non-Cytoplasmic	141	219	0.86
Transmembrane Helix	220	243	0.83
Cytoplasmic	244	253	0.62
Transmembrane Helix	254	275	0.77
Non-Cytoplasmic	276	279	0.70