YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91686555, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFKPRRPR NSGPLPRPFR RNKPMVTEAA VDSRRAQRQQ FLRKRGIYLL PNAFTTAALF  60
   61 CGFFAVVQAM NVRFEVAAIA IFVAMVLDGM DGRVARMTHT QSAFGEQFDS LSDMVSFGVA 120
  121 PALVMYEWIL KDLGRWGWLA AFVYCSGAAL RLARFNTNIG VVDKRFFQGM PSPAAAALIA 180
  181 GFVWLATDNR VPLKLVWLPW VAFVLTIYAG VTMVSNAPFY SGKALDVRHR VPFGVILLVV 240
  241 VAFVLVSSDP PLMLFGLFVL YGLSGYVFWG YQALRGRANP ARSVVRDR

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	67	0.96
Non-Cytoplasmic	68	73	0.78
Transmembrane Helix	74	95	0.82
Cytoplasmic	96	109	0.86
Transmembrane Helix	110	130	0.86
Non-Cytoplasmic	131	135	0.86
Transmembrane Helix	136	155	0.93
Cytoplasmic	156	165	0.92
Transmembrane Helix	166	187	0.92
Non-Cytoplasmic	188	195	0.90
Transmembrane Helix	196	219	0.88
Cytoplasmic	220	228	0.82
Transmembrane Helix	229	246	0.95
Non-Cytoplasmic	247	252	0.75
Transmembrane Helix	253	273	0.91
Cytoplasmic	274	288	0.94