YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40057
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYFMRMVRS SEKSYKLHIT LLGILSIFVI VNLCLLCYGD KQKYLTFPMT TIVYKGGLGN  60
   61 QLFEVLSLLG IARKLKRIAV FNSSDPVLQS NLEFLNQKLP RISEQVISVP IEPSETTRFA 120
  121 ISSDCCRYEL SDNHLADESK FLVIEGHYFQ SYKYFADMKL SIKEWLKPED PEKFRMMISK 180
  181 TESQRHKTCV HVRRGDFLTD EQHAGTDSNY TISAIDHLRS LYHGVIFIMS NDPKWVKVHI 240
  241 ADHLDYQKDI RIMKTLMEDA IDDLHFSQIY CDSVLITAPS STFGWWIGYL SKNQSAVYYR 300
  301 DIRETKDQVQ LQMTKEDFYP PTWNKLVIP

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	39	0.89
Non-Cytoplasmic	40	329	0.67