YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92442343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	448	0.95
Transmembrane Helix	449	471	0.92
Cytoplasmic	472	480	0.91
Transmembrane Helix	481	500	0.95
Non-Cytoplasmic	501	507	0.73
Transmembrane Helix	508	530	0.87
Cytoplasmic	531	550	0.87
Transmembrane Helix	551	573	0.90
Non-Cytoplasmic	574	580	0.87
Transmembrane Helix	581	600	0.96
Cytoplasmic	601	635	0.95
Transmembrane Helix	636	658	0.89
Non-Cytoplasmic	659	675	0.89
Transmembrane Helix	676	697	0.90
Cytoplasmic	698	705	0.87
Transmembrane Helix	706	725	0.95
Non-Cytoplasmic	726	731	0.83
Transmembrane Helix	732	755	0.87
Cytoplasmic	756	765	0.87
Transmembrane Helix	766	788	0.88
Non-Cytoplasmic	789	796	0.89
Transmembrane Helix	797	819	0.93
Cytoplasmic	820	843	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLGGEDALL DAQFAQRDLE DLEVGDLVDH RFDGPVVVVV VVVGHGGVLR CSACRFEPAF  60
   61 GQFGLQGVGG RAGVAVPELG LVEPDDVEPL GCRVGAIPGL VLRRRALVGH LRDHAGRTAG 120
  121 VLGGAGVEQH GQLPDSNRVA DGELRLTGQP GVHLRIALAD RVAVVFVALD LRTVTLELRL 180
  181 RLGFAAVEPV GVTRLDLGHA LGQLGQPDVV FLDEDACDRE QPATVVGQPE ILRPADVDVA 240
  241 DPAPLLGEPD AAPGEDFADD VGGFLPLFVL LVLVLHRCVG FAADVVHRFQ VGRDAAVVEQ 300
  301 IGCRRVRQFR IRRLESCDEV QLCCAVGCRT HGSSPCGADG GAATRCDPTA DASANILDQS 360
  361 SLDRSSFVGT GDALCRVALP RYRPRMSDGE TLSSSTGPTR APTSTRRAVL NTIRGSAGNL 420
  421 VEWYDVYVYT VFATYFEAQF FDQDDENSTL YIYAIFAVTF VMRPVGSWFF GRFADRRGRK 480
  481 AALMVSITVM SSCSFVVAVM PTREVIGYWA AVILIAARLL QGFATGGEYG TSATYMSEAA 540
  541 TPRRRGFLSS FQYVTLVGGH VLAQFTLLIA LSVLDVEAVT AWGWRIGFFI GGIAALVVLW 600
  601 MRRSMDESLS DSHLEAIREG NDREAGSVKA LFTTHWRALL LCFLITAGGT VAFYTYTINA 660
  661 PAIVKSTFGS DRALTGTWIN LLGLIFLMLL QPLGGLLSDK VGRKPLLISF AVGGILYTYV 720
  721 LLTYLPQTTS PLTAFALTAV GYIILTGYTS VNAIVKAELF PADVRALGVG LGYALANSAF 780
  781 GGTAPLLYQG AKSSDQIGWF IVYVTVVIGV SLSVYVFGLK NKGITALDRE QGSAWRVPEP 840
  841 AAR