YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108772130, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKSVSTLV LDGLAVFEFG VICEVFGIDR SADGVPNFDF KVCGPVAGEP VRTTIGAHLT  60
   61 PQHDFGDLLG ADLVAVPAIA SGKNGYPREA LEVLREAAAG GSIILTVCSG AFVVGAAGLL 120
  121 DGRPCTTHWM YADLLARMYP TARVDRNVLF VDDGNLITSA GTAAGIDACL HLVRRELGSE 180
  181 VTNRIARRMV VPPQRDGGQR QYIEQPIPVR CSERFAPHLD WIVANLDKPH TVSTLARRAN 240
  241 MSARTFARRF VEETGTTPMQ WVTDQRVLYA RRMLEESDLD IDRIAERSGF GTATLLRHHF 300
  301 RRIIGVTPTD YRRRFCCNDT QAEQTA

Type	Start	End	Confidence
Signal Peptide	1	15	0.27
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	326	0.71