YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMEM56
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEINTKLLIS VTCISFFTFQ LLFYFVSYWF SAKVSPGFNS LSFKKKIEWN SRVVSTCHSL  60
   61 VVGIFGLYIF LFDEATKADP LWGGPSLANV NIAIASGYLI SDLSIIILYW KVIGDKFFIM 120
  121 HHCASLYAYY LVLKNGVLAY IGNFRLLAEL SSPFVNQRWF FEALKYPKFS KAIVINGILM 180
  181 TVVFFIVRIA SMLPHYGFMY SVYGTEPYIR LGVLIQLSWV ISCVVLDVMN VMWMIKISKG 240
  241 CIKVISHIRQ EKAKNSLQNG KLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	30	0.89
Cytoplasmic	31	50	0.64
Transmembrane Helix	51	72	0.89
Non-Cytoplasmic	73	89	0.67
Transmembrane Helix	90	112	0.85
Cytoplasmic	113	171	0.75
Transmembrane Helix	172	192	0.92
Non-Cytoplasmic	193	211	0.83
Transmembrane Helix	212	233	0.89
Cytoplasmic	234	263	0.95