YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108770642, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	66	0.89
Non-Cytoplasmic	67	80	0.87
Transmembrane Helix	81	100	0.93
Cytoplasmic	101	109	0.84
Transmembrane Helix	110	131	0.93
Non-Cytoplasmic	132	145	0.77
Transmembrane Helix	146	168	0.78
Cytoplasmic	169	178	0.78
Transmembrane Helix	179	196	0.94
Non-Cytoplasmic	197	202	0.64
Transmembrane Helix	203	219	0.72
Cytoplasmic	220	223	0.54
Transmembrane Helix	224	244	0.84
Non-Cytoplasmic	245	308	0.68
Transmembrane Helix	309	328	0.91
Cytoplasmic	329	338	0.89
Transmembrane Helix	339	363	0.81
Non-Cytoplasmic	364	372	0.68
Transmembrane Helix	373	393	0.87
Cytoplasmic	394	511	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATILARLRG KAAGPGADEP PRAAQPPTVS HTRFAAWLGR PMTSFHLIIA VTALLITLGL  60
   61 TMVLSASGVY SYDSDGSPWS VFAKQVLWTV VGLVAFYAAL RMPVKTLRRL AFPGFAFTIV 120
  121 LLILVLIPGI GKVANGSRGW FVVAGFSMQP SELAKIAFAI WGAHLLAARR MERATLREML 180
  181 VPLVPAAVIA LALIVAQPDL GQTVSLGIIL LALLWYAGLP LKVFLSSLFA VMVSAAVLAM 240
  241 AEGYRSARVQ SWLDPSADAQ GSGYQARQAK FALANGGVFG DGLGQGTAKW NYLPNAHNDF 300
  301 IFAIIGEELG FVGAAGLLAL FGLFAYTGMR IARRSADPFL RLLTATATTW VLGQVFINVG 360
  361 YVVGLLPVTG LQLPLISAGG TSTATTLLMM GLITNAARHE PDAVAALRAG RDDRVNRLLR 420
  421 LPPPEPYVPT PLEAVRDRLR SRPGKPAAPR AAKPARAPRR PKPPAAEDRV RGSRHHVGGQ 480
  481 RSATRRTGQD QQGRRGQQGR RARPREGQRY G