YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108801956, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDEASAQS KTMARAWRDL REGFGKRELW LHLGWQDIKQ RYRRSVLGPF WITIATGATA  60
   61 VAMGLLYSKL FKLELSEHLP YVTMGLIVWN LINASILEGA EVFIANEGLI KQLPTPLSVH 120
  121 VYRLVWRQMI LFAHNIIIFV VIAIIYPKPW HWTDLAVFPA LALIMLNCVW VSLCFGILAT 180
  181 RYRDIGPLLN SIVQLLFFMT PIIWNEATLQ AQGAGQWAKI VELNPLLHYL DIVRAPLLGA 240
  241 DQEVRHWIVV LVLTVIGWTF AAFAMKQYRA RVPYWV

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	67	0.93
Non-Cytoplasmic	68	84	0.77
Transmembrane Helix	85	105	0.86
Cytoplasmic	106	124	0.91
Transmembrane Helix	125	146	0.90
Non-Cytoplasmic	147	155	0.80
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	185	0.84
Transmembrane Helix	186	207	0.84
Non-Cytoplasmic	208	245	0.90
Transmembrane Helix	246	265	0.94
Cytoplasmic	266	276	0.89