YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|108800912, gi...
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVVLAVGG MTCASCAARV EKKLNRIDGV SASVNYATEQ ATVSYPDTVR PEDLVAAVEA  60
   61 TGYTATLPTP EPEEPEPRGE PDEAAAWRQR LTISAALSLP VVLLSMIPAL QFDNWQWLAL 120
  121 TLASPVVVWG AWPFHRAAWM NLRHGAATMD TLISVGVTAA YLWSLWALFF THAGMPGMTM 180
  181 SFDLLPSDTG DVHLYLEVAA AVTTFLTAGR YFEARAKRQS GAALRALLDM GAKDVAVLRD 240
  241 SREVRIPVGQ LTVGDEFVVR PGEKIATDGV VVSGSSAVDQ SMLTGESVPV EKGPGDDVVG 300
  301 ATVNVGGRLT VRATRVGADT QLAQMARLVN EAQSGKAEVQ RLADRVSAVF VPVVIGLSLL 360
  361 TLAGWLLVGG PVSAAFTAAV AVLIIACPCA LGLATPTALL VGTGRGAQLG ILIKGPQMLE 420
  421 STRRVDTVVL DKTGTVTTGQ MSVVSTHADE ATMRLFGALE SASEHPIARA IAAHAAERGQ 480
  481 LPAVEQFENH GGSGVSGVVD GHRVAAGRLA WLSRDTAAPV PPDLREVAEA AEAEGRTPVW 540
  541 FAVDGEICGV AVVSDTVKDH AVDAIADLRA LGLTPVLLTG DNRRAAQAVA RQVGIDVRDD 600
  601 TVIAEVLPQD KVDAVRALQR DGKVVAMVGD GVNDAAALAQ ADLGLAMGTG TDAAIEASDL 660
  661 TLVTGDLRAV PDAIRLSRAT LRTIKGNLFW AFAYNVAALP LAAFGLLNPL IAGAAMAFSS 720
  721 VFVVTNSLRL RRFTPSR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle