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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: JEM1
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKNRAKTA YKLFQVKGVG CEKGPEGFIH CWFSVLLRPI LTSTKRSMIL ISGYCLLVYS  60
   61 VILPVLISAS KLCDLAELQR LNKNLKVDTE SLPKYQWIAG QLEQNCMTAD PASENMSDVI 120
  121 QLANQIYYKI GLIQLSNDQH LRAINTFEKI VFNETYKGSF GKLAEKRLQE LYVDFGMWDK 180
  181 VHQKDDQYAK YLSLNETIRN KISSKDVSVE EDISELLRIT PYDVNVLSTH IDVLFHKLAE 240
  241 EIDVSLAAAI ILDYETILDK HLASLSIDTR LSIHYVISVL QTFVLNSDAS FNIRKCLSID 300
  301 MDYDKCKKLS LTISKLNKVN PSKRQILDPA TYAFENKKFR SWDRIIEFYL KDKKPFITPM 360
  361 KILNKDTNFK NNYFFLEEII KQLIEDVQLS RPLAKNLFED PPITDGFVKP KSYYHTDYLV 420
  421 YIDSILCQAS SMSPDVKRAK LAAPFCKKSL RHSLTLETWK HYQDAKSEQK PLPETVLSDV 480
  481 WNSNPHLLMY MVNSILNKSR SKPHSQFKKQ LYDQINKFFQ DNGLSESTNP YVMKNFRLLQ 540
  541 KQLQTYKEHK HRNFNQQYFQ QQQQQQQHQR HQAPPAAPNY DPKKDYYKIL GVSPSASSKE 600
  601 IRKAYLNLTK KYHPDKIKAN HNDKQESIHE TMSQINEAYE TLSDDDKRKE YDLSRSNPRR 660
  661 NTFPQGPRQN NMFKNPGSGF PFGNGFKMNF GL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle