YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1279717, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQLGALAQV SRFTQNFSME NIKSEFQSFQ SKLATLRTPQ EFFNFKKISK PQNFGEVQSR  60
   61 VAYNLKYFSS NYGLIIGCLS IYTLLTNLLL LFVIVLVVAG IVGINKLKGE ELVTPFGSFK 120
  121 TNQLYTGLVC VAVPIGFLAS PISTLLWLIG ASAVSVFGHA SLMEKPIETV FDEETV

Type	Start	End	Confidence
Cytoplasmic	1	71	0.81
Transmembrane Helix	72	104	0.75
Non-Cytoplasmic	105	123	0.65
Transmembrane Helix	124	157	0.73
Cytoplasmic	158	176	0.65