YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|731632, gi\|62...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPPFQTYPS KNSEGKKHIV IVGGGIIGCC TAYYLTQHPS FSPSTHHITI IESRRIAGGA  60
   61 SGKAGGLLAS WAFPHQIVPL SFQLHQELSD EYDGENNWDY RRLTTVSLEA DVREEVIENY 120
  121 ERLSKKAYNL NVPPPKKRPG YISNKFNIGD SNSSLSSSGS SLKNDSASNE EEGSDIHVSS 180
  181 SVPSLHSLTN ERMRSHTNSA SDLDSVSPVE QLRETNIHNP LPADLDWIRR ELVNDWSSLG 240
  241 GTDTTAQLHP YKFTHFILSK AMETGAVDLL LGKVVGLKCD EMDCVHSLKY LPSVVKNRRN 300
  301 SRGHAENPDI KLGTIFNDEN AKPIEINDIQ QIVLSMGPWT SKILKDCPIS GLRAHSVTIK 360
  361 PSEKTVSPYA ILAELKVNDR EFFSPEMYAR KDEVYVCGEG DTLVNIPESS DDVEVVSEKC 420
  421 DELYHYVSKL SPTLSKGHLL RKQACFLPVL NVPTSSGPLI GETNVKDLYI ASGHSCWGIN 480
  481 NAPATGKLMA EILLDGEATS AEISSLDPKL YFDATILS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.78
Transmembrane Helix	18	36	0.88
Non-Cytoplasmic	37	518	0.98