YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254975860
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	310	0.98
Transmembrane Helix	311	332	0.93
Non-Cytoplasmic	333	353	0.86
Transmembrane Helix	354	373	0.88
Cytoplasmic	374	380	0.76
Transmembrane Helix	381	408	0.82
Non-Cytoplasmic	409	431	0.88
Transmembrane Helix	432	453	0.89
Cytoplasmic	454	462	0.68
Transmembrane Helix	463	487	0.78
Non-Cytoplasmic	488	511	0.85
Transmembrane Helix	512	534	0.92
Cytoplasmic	535	547	0.90
Transmembrane Helix	548	566	0.54
Non-Cytoplasmic	567	570	0.47
Transmembrane Helix	571	594	0.84
Cytoplasmic	595	608	0.41
Transmembrane Helix	609	631	0.89
Non-Cytoplasmic	632	639	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIDLLDEK SIKLNLNSKT KSEAIEELVD LVANSGNLND KENYKKAILA REEMSTTGIG  60
   61 EGVAIPHAKN SSVTKACIAA AVSKEGIDYE SFDGSLSNLF FMIAAPDGAN NTHLEVLSRL 120
  121 STILMDEDFR NKLINSSSEK EFKEIIDKKE REKFSEEYQD EKVAEKNIID TKENDANKYP 180
  181 KVLAVTACPT GIAHTFMAAE SLNKMAENKG VSIKVETNGS AGVKNKLTKD EIENATCIIV 240
  241 AADKNVEMAR FNGKKVIKTK VADGIHKAEE LIDKAVNGDA PIYHGGDGSH NESNEESESG 300
  301 FRKVYKHLMN GVSNMLPFVI GGGILIAIAF LLDDYTINPS NFGSNTPIAA FFKGIGDKAF 360
  361 GFMLPVLAGY IAYSISDRPA FVVGFVGGAL AGDGGSGFLG ALLAGFIAGY LVEGLKKIFS 420
  421 VLPASLEGIK PVLLYPLLGT LLMGIIMTFL VIPPVTAINN AMVGFLNGLG GTSKIVLGLV 480
  481 LGGMMAVDMG GPVNKAAYVF GVASLESGQF EIMAAVMAGG MVPPLAIALA TTFFKNRFTK 540
  541 EERDSGKVNY VMGLSFVTEG AIPFAAGDPL HVIPACVGGS AVAGALSMLF NAALRAPHGG 600
  601 VFVIPVVTHP FAYILAIAVG ALVGMMLLAL LKKPLNQEV