YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255518355
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNVNLFLVF IEGIVSFFSP CILPILPIYL SILSNSSVEN LKEGKTSFIG SSLFKNTIFF  60
   61 ALGISTTFFI LGSSVKVLSM FFNENKDLIM FIGGIIIIIM GLFYMGIIKS SILNREKRFN 120
  121 VKFKEMKAIT AFILGFTFSF GWTPCIGPIL ASVLVMVSSS SNHLSANLLI AVYTIGFILP 180
  181 FIITAMFYSK LFKTIDKIKS NMEIIKKIGG IILIVSGILM MVNGFGSISK HFNTSQNSKI 240
  241 ESKQEENKRE NSTDKEENSD GNNSQKDSNN DNNDNGSNDE DRIKSIDFTL TDQYGKTHKL 300
  301 SDYEGKVVFL NFWATWCPPC KEEMPYIEQL YKDYNKNNDD VVILGVASPN LGREGSREHV 360
  361 VNFLKDQGYT FPVVLDEDGA LAYQYGINAF PTTFIIDKEG YVTQYIPGAM DKATMASFIE 420
  421 NQRNK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	33	0.82
Cytoplasmic	34	52	0.91
Transmembrane Helix	53	73	0.89
Non-Cytoplasmic	74	87	0.82
Transmembrane Helix	88	108	0.96
Cytoplasmic	109	128	0.92
Transmembrane Helix	129	151	0.94
Non-Cytoplasmic	152	168	0.79
Transmembrane Helix	169	188	0.96
Cytoplasmic	189	207	0.88
Transmembrane Helix	208	228	0.94
Non-Cytoplasmic	229	425	0.99