YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDRB_YEAST, PDR1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	382	0.64
Transmembrane Helix	383	405	0.83
Cytoplasmic	406	412	0.47
Transmembrane Helix	413	436	0.80
Non-Cytoplasmic	437	461	0.58
Transmembrane Helix	462	485	0.85
Cytoplasmic	486	493	0.54
Transmembrane Helix	494	518	0.89
Non-Cytoplasmic	519	523	0.49
Transmembrane Helix	524	545	0.91
Cytoplasmic	546	633	0.58
Transmembrane Helix	634	656	0.90
Non-Cytoplasmic	657	1089	0.70
Transmembrane Helix	1090	1110	0.74
Cytoplasmic	1111	1117	0.55
Transmembrane Helix	1118	1137	0.71
Non-Cytoplasmic	1138	1171	0.80
Transmembrane Helix	1172	1194	0.86
Cytoplasmic	1195	1203	0.76
Transmembrane Helix	1204	1225	0.92
Non-Cytoplasmic	1226	1232	0.76
Transmembrane Helix	1233	1256	0.88
Cytoplasmic	1257	1354	0.84
Transmembrane Helix	1355	1378	0.89
Non-Cytoplasmic	1379	1410	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSKYFNPIP DASVTFDGAT VQLEESLGAV QNDEESASEF KNVGHLEISD ITFRANEGEV  60
   61 VLVLGNPTSA LFKGLFHGHK HLKYSPEGSI RFKDNEYKQF ASKCPHQIIY NNEQDIHFPY 120
  121 LTVEQTIDFA LSCKFHIPKQ ERIEMRDELL KEFGLSHVKK TYVGNDYVRG VSGGERKRIS 180
  181 IIETFIANGS VYLWDNSTKG LDSATALEFL SITQKMAKAT RSVNFVKISQ ASDKIVSKFD 240
  241 KILMLGDSFQ VFYGTMEECL THFHDTLQIK KNPNDCIIEY LTSILNFKFK ETSNSIVGLD 300
  301 TPSVVSEENQ ALNINNETDL HTLWIQSPYY KHWKAITSKT VQECTRKDVN PDDISPIFSI 360
  361 PLKTQLKTCT VRAFERIIGD RNYLISQFVS VVVQSLVIGS LFYNIPLTTI GSFSRGSLTF 420
  421 FSILFFTFLS LADMPASFQR QPVVRKHVQL HFYYNWVETL ATNFFDCCSK FILVVIFTII 480
  481 LYFLAHLQYN AARFFIFLLF LSVYNFCMVS LFALTALIAP TLSMANLLAG ILLLAIAMYA 540
  541 SYVIYMKDMH PWFIWIAYLN PAMFAMEAIL SNELFNLKLD CHESIIPRGE YYDNISFSHK 600
  601 ACAWQGATLG NDYVRGRDYL KSGLKYTYHH VWRNFGIIIG FLCFFLFCSL LAAEYITPLF 660
  661 TRENLLRWNN YLKRYCPFLN SQKKNNKSAI TNNDGVCTPK TPIANFSTSS SSVPSVSHQY 720
  721 DTDYNIKHPD ETVNNHTKES VAMETQKHVI SWKNINYTIG DKKLINDASG YISSGLTALM 780
  781 GESGAGKTTL LNVLSQRTES GVVTGELLID GQPLTNIDAF RRSIGFVQQQ DVHLELLTVR 840
  841 ESLEISCVLR GDGDRDYLGV VSNLLRLPSE KLVADLSPTQ RKLLSIGVEL VTKPSLLLFL 900
  901 DEPTSGLDAE AALTIVQFLK KLSMQGQAIL CTIHQPSKSV ISYFDNIYLL KRGGECVYFG 960
  961 SLPNACDYFV AHDRRLTFDR EMDNPADFVI DVVGSGSTNI PMDDAEKPTS SKIDEPVSYH1020
 1021 KQSDSINWAE LWQSSPEKVR VADDLLLLEE EARKSGVDFT TSVWSPPSYM EQIKLITKRQ1080
 1081 YICTKRDMTY VFAKYALNAG AGLFIGFSFW RTKHNINGLQ DAIFLCFMML CVSSPLINQV1140
 1141 QDKALQSKEV YIAREARSNT YHWTVLLIAQ TIVELPLAIS SSTLFFLCCY FCCGFETSAR1200
 1201 VAGVFYLNYI LFSMYYLSFG LWLLYSAPDL QTAAVFVAFL YSFTASFCGV MQPYSLFPRF1260
 1261 WTFMYRVSPY TYFIETFVSL LLHDREVNCS TSEMVPSQPV MGQTCGQFMK PFIDEFGGKL1320
 1321 HINNTYTVCA YCMYTVGDDF LAQENMSYHH RWRNFGFEWV FVCFNIAAMF VGFYLTYIKK1380
 1381 IWPSVIDGIK KCIPSMRRSK TSHNPNEQSV