YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108742027, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDLPVLLA AVSVLSALHM GFQARRVGWS RMKFKIVPPI VTGPPEFERT FRAHQNSVEF  60
   61 YAIFVVLLWI SGIFFNEVVA ALGGLVYIVG REMYFTGYIS ESKRRLPGFY LVSFVLLFLA 120
  121 VTAAIGIFQA FLDKYL

Type	Start	End	Confidence
Signal Peptide	1	23	0.47
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	64	0.72
Transmembrane Helix	65	89	0.89
Cytoplasmic	90	107	0.76
Transmembrane Helix	108	131	0.91
Non-Cytoplasmic	132	136	0.79