YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95132399, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFILFIRGV TLPGAKEGIL FYITPDFEKL KESEVWLDAA TQIFFSYGLG LGSLIALGSY  60
   61 NPFNNNVYRD SIIVCCINSF TSMFAGFVIF SIVGFMSHVT KRPIADVAAS GPGLAFLAYP 120
  121 EAVTQLPVSP LWAILFFSML LMLGIDSQFC TVEGFITALV DEFPRLLRKR REIFIACVCV 180
  181 VSYAIGLSNI TQGGLYVFKL FDYYSASGMC LLFLVFFECI SISWCYGVNK FYDNIQEMIG 240
  241 YKPCIWWKLC WVFFTPLVVA GVFLFSAVQM VPLTMNNYVF PKWGQGVGWL MALSSMVLIP 300
  301 GYMGYMFLNL KGTYKERIRI MLQPPAVKRA QENGPEQQQP QPPIQEQSPQ QPQSPQQPQS 360
  361 PQQPQSPQQP QSPEQPQSPQ QPQSPQQPQS PQQPQPPDQA PQQPQSPPQP LQPQVQADSS 420
  421 SPTNPGNDAN V

Type	Start	End	Confidence
Cytoplasmic	1	38	0.75
Transmembrane Helix	39	60	0.85
Non-Cytoplasmic	61	70	0.66
Transmembrane Helix	71	95	0.88
Cytoplasmic	96	103	0.64
Transmembrane Helix	104	123	0.71
Non-Cytoplasmic	124	130	0.75
Transmembrane Helix	131	152	0.86
Cytoplasmic	153	172	0.88
Transmembrane Helix	173	195	0.90
Non-Cytoplasmic	196	204	0.83
Transmembrane Helix	205	228	0.90
Cytoplasmic	229	246	0.92
Transmembrane Helix	247	268	0.93
Non-Cytoplasmic	269	286	0.90
Transmembrane Helix	287	309	0.92
Cytoplasmic	310	431	0.99