YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MFSD8_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.99
Transmembrane Helix	33	56	0.89
Non-Cytoplasmic	57	66	0.92
Transmembrane Helix	67	89	0.91
Cytoplasmic	90	98	0.87
Transmembrane Helix	99	117	0.95
Non-Cytoplasmic	118	126	0.82
Transmembrane Helix	127	149	0.89
Cytoplasmic	150	163	0.86
Transmembrane Helix	164	185	0.86
Non-Cytoplasmic	186	201	0.88
Transmembrane Helix	202	224	0.90
Cytoplasmic	225	261	0.94
Transmembrane Helix	262	283	0.85
Non-Cytoplasmic	284	298	0.86
Transmembrane Helix	299	320	0.92
Cytoplasmic	321	331	0.75
Transmembrane Helix	332	351	0.95
Non-Cytoplasmic	352	404	0.95
Transmembrane Helix	405	427	0.81
Cytoplasmic	428	437	0.85
Transmembrane Helix	438	461	0.83
Non-Cytoplasmic	462	468	0.79
Transmembrane Helix	469	489	0.95
Cytoplasmic	490	504	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLEESGENT PLLRGEIISD GDTDRSRWRS IRVMYFTMFL SSVGFTIVIT SIWPYLKKID  60
   61 ESADASFLGW VVAAYSLGQM VASPFFGLWS NHRPRREPLV CSIFINVSAN IYYSYVYLPP 120
  121 SHNQIHMLLA RTFVGIGAGN VAVVRSYVAG ATSLKERTSA MANMSACQAL GFILGPALQA 180
  181 VLSFIGETGV SVDVIKLQVN MYTAPALLAA CFGVINILLV ILVLREHSVD DHGNRIRPIN 240
  241 YTPEERVDVP PEVEGDIDHI AVFTSNVLFF IILFIFAVFE TISTPLSMDM FAWTRKEAVL 300
  301 YNGIILAAIG FESILVFLVV KVVSARVGDR PLLLGGLILI FVGFFMLLPW GNQYPKIQWT 360
  361 DINNNTIPPI QLAPTPASNS SLEPIGCPSE QTWCLFTPVI HLAQYITSDI LIGVGYPTCN 420
  421 VMSYTLYSKI LGPKPQGVYM GWLTASGSGA RTLGPVFVSH FYTILGPRWA FSAICGIVLA 480
  481 AIVMLSAMYK RLVAFSIRHG RIAE