YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182888974, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLYLRHYWK DERLSFTSST NKSMTFDGRL VKKIWVPDVF FVHSKRSFIH DTTTENIMLR  60
   61 VFPDGHVLYS LRVTVTAACN MDFSRFPLDS QTCSLELESY AYTDEDLMLY WKNGDESLSI 120
  121 DEKISLSQFL IQKFHTTSRL AFYSSTGWYN RLYINFTLRR HIFFFLLQTY FPATLMVMLS 180
  181 WVSFWIDRRA VPARVSLGIT TVLTMSTIIT GVNASMPRVS YIKAVDIYLW VSFVFVFLSV 240
  241 LEYAAVNYLT TVQERRERKL RDRAVREQSL PCTCGMSHTR TMMLDGTYSE ADTNSLAGYT 300
  301 EAPMVHEEVV PEKQEHMVVH LSVSSESTNT KKKGIRALRI MQNTHAIDKY SRMIFPGAYI 360
  361 IFNLIYWSVY C

Type	Start	End	Confidence
Non-Cytoplasmic	1	161	0.70
Transmembrane Helix	162	185	0.88
Cytoplasmic	186	194	0.65
Transmembrane Helix	195	216	0.87
Non-Cytoplasmic	217	226	0.74
Transmembrane Helix	227	251	0.87
Cytoplasmic	252	349	0.82
Transmembrane Helix	350	370	0.55
Non-Cytoplasmic	371	371	0.75