YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113679236, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPCTVALE LFGMLIGAGG WFCSLAATIM PQWLSRSTEL FATESFEQGL WEVCVIQEVA  60
   61 GMECRPYDTI LGLDPTVMLA RILMCMSNAT GLLGILLAIP SMSQIKCCKG EEGRKTKRGL 120
  121 KISAAVFLCI AGLLVLTPIS YVAHDTVMRY FDESVPHVVP RSEFGDALFI GWSAGLLYIV 180
  181 ASVLLFASCT DSGNSEPHLV YHHRRQDTRT LDRSGKRTEY V

Type	Start	End	Confidence
Cytoplasmic	1	10	0.82
Transmembrane Helix	11	30	0.95
Non-Cytoplasmic	31	77	0.95
Transmembrane Helix	78	99	0.93
Cytoplasmic	100	119	0.91
Transmembrane Helix	120	142	0.91
Non-Cytoplasmic	143	167	0.93
Transmembrane Helix	168	189	0.90
Cytoplasmic	190	221	0.96