YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86437966, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLFLERFP WPSLRTYTGL SGLALLGTIV SAYRALSQPE AGPGHTEAEP VTAPVQPDPA  60
   61 ALVRPSAGGP RARDVAQYLL SDSLFVWVLV NTACCILMLV AKLIQCIVFG PLRVSERQHL 120
  121 KDKFWNFIFY KFIFIFGVLN VQTVEEVVMW CLWFAGLVFL HLMVQLCKDR FEYLSFSPTT 180
  181 PMSSHGRVLS LLVAMLLSCC GLAVVCCVTG YTHGMHTLAF MAAESLLVTV RTAHVILRYV 240
  241 IHLWDLSHEG TWEGKGTYVY YTDFVMELTL LSLDLMHHIH MLLFGNIWLS MASLVIFMQL 300
  301 RYLFHEVQRR IRRHKNYLRV VGNMEARFAV ATPEELAVNN DDCAICWDSM QAARKLPCGH 360
  361 LFHNSCLRSW LEQDTSCPTC RMSLNIADNN RVREDHPGEN LDENLVPVAA AEGRPRLNQH 420
  421 NHFFHFDGSR IASWLPSFSV EVMHTTNILG ITQASNSQLN AMAHQIQEMF PQVPYHLVLQ 480
  481 DLQLTRSVEI TTDNILEGRI QVPFPTQRSE SIRPALNSPV ERPNGEQEDG EASVQTERVP 540
  541 LDLSPRLEEV LDFGELEAEP SEGEDFEARG SRFSKSADER QRMLVQRKDD LLQQARRRFL 600
  601 NRSSEDDSAS ESCLPSEGTT SDPVTLRRRM LAAAAERRLQ KQQAS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.86
Transmembrane Helix	16	36	0.89
Non-Cytoplasmic	37	83	0.98
Transmembrane Helix	84	106	0.89
Cytoplasmic	107	123	0.88
Transmembrane Helix	124	143	0.88
Non-Cytoplasmic	144	148	0.75
Transmembrane Helix	149	167	0.90
Cytoplasmic	168	187	0.88
Transmembrane Helix	188	212	0.92
Non-Cytoplasmic	213	281	0.53
Transmembrane Helix	282	304	0.89
Cytoplasmic	305	645	0.71