YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.98
Transmembrane Helix	67	87	0.93
Non-Cytoplasmic	88	120	0.93
Transmembrane Helix	121	140	0.95
Cytoplasmic	141	149	0.81
Transmembrane Helix	150	170	0.94
Non-Cytoplasmic	171	176	0.89
Transmembrane Helix	177	198	0.94
Cytoplasmic	199	207	0.86
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	242	0.79
Transmembrane Helix	243	262	0.90
Cytoplasmic	263	326	0.96
Transmembrane Helix	327	345	0.69
Non-Cytoplasmic	346	367	0.66
Transmembrane Helix	368	387	0.91
Cytoplasmic	388	394	0.92
Transmembrane Helix	395	416	0.93
Non-Cytoplasmic	417	433	0.84
Transmembrane Helix	434	456	0.88
Cytoplasmic	457	470	0.88
Transmembrane Helix	471	492	0.88
Non-Cytoplasmic	493	497	0.79
Transmembrane Helix	498	518	0.92
Cytoplasmic	519	576	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEAAYQED TAVQNTPADA LSPVESDSNS ALSTPSNKAE RDDMKDFDEN HEESNNYVEI  60
   61 PKKPASAYVT VSICCLMVAF GGFVFGWDTG TISGFVAQTD FIRRFGMKHH DGTYYLSKVR 120
  121 TGLIVSIFNI GCAIGGIILA KLGDMYGRKM GLIVVVVIYI IGIIIQIASI NKWYQYFIGR 180
  181 IISGLGVGGI AVLSPMLISE VSPKHIRGTL VSCYQLMITL GIFLGYCTNY GTKTYTNSVQ 240
  241 WRVPLGLGFA WALFMIGGMT FVPESPRYLV EVGKIEEAKR SIALSNKVSA DDPAVMAEVE 300
  301 VVQATVEAEK LAGNASWGEI FSTKTKVFQR LIMGAMIQSL QQLTGDNYFF YYGTTVFTAV 360
  361 GLEDSFETSI VLGIVNFAST FVGIFLVERY GRRRCLLWGA ASMTACMVVF ASVGVTRLWP 420
  421 NGKKNGSSKG AGNCMIVFTC FYLFCFATTW APIPFVVNSE TFPLRVKSKC MAIAQACNWI 480
  481 WGFLIGFFTP FISGAIDFYY GYVFMGCLVF SYFYVFFFVP ETKGLTLEEV NTLWEEGVLP 540
  541 WKSPSWVPPN KRGTDYNADD LMHDDQPFYK KMFGKK