YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110287607, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILSVLSSPA LVSGLMVVRA KNPVHSVLFP ILVFCDTSGL LILLGLDFSA MIFPVVHIGA  60
   61 IAVSFLFVVM MFNIQIAEIH EEVLRYLPVS GIIGLIFWWE MFFILDNETI PLLPTHRNTT 120
  121 SLKYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVSSLILL VAMIGAIVLT MHRTTKVKRQ 180
  181 DVFRRNALDS RRTTIHIQNR RFFSHKGDDA PVPPADPESI KSDLAERIER IYRRAGEEQS 240
  241 LVEAGTTPRE LVDNVLPEGA ELPLLQETWV QFVRDESHSE FWVEIDNLLR KYGHAARGEP 300
  301 DTPDPDAPLV EPDAPQSGGG DSAGSTGEEN CPGAGKVGTS EGPPESRKRK SYSDSDSGGD 360
  361 DGSDPAPDPS PFDFD

Type	Start	End	Confidence
Cytoplasmic	1	23	0.92
Transmembrane Helix	24	46	0.86
Non-Cytoplasmic	47	52	0.77
Transmembrane Helix	53	74	0.92
Cytoplasmic	75	82	0.88
Transmembrane Helix	83	104	0.91
Non-Cytoplasmic	105	148	0.96
Transmembrane Helix	149	170	0.94
Cytoplasmic	171	375	0.99