YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147899069, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVCRGAGL SAVLRAAGTC SRKSTLTAGA CIEASRLIHN SAAVHRKNVA APGCEKYTEA  60
   61 FIKKQIEEYN IGKRHLANMM GEDPETFTQE DIDRAIAYLF PSGLFDKKAR PIMKHPEDIF 120
  121 PKQRAIQWGE DGRPFHFLFY TGKQSYYSLM HELYGKLLSI QQYEDQIRSK GLYSEDKRQM 180
  181 DLIGSRWLIK EELEEMLVEK LSDQDYLHFL QMLERLLILP YCSIEEEYVL KFRKNLEVQS 240
  241 KKQVVNPLQY DEHGRAFSTG EGKRKTAQAT VMLHETGNGT VVVNGVNYSE YFTVLQDREQ 300
  301 LMFPIQFLNR LGKHNLECTV AGGGKSSQAG AIRLATARAL LSFVSENEIE AMRQAGLLTT 360
  361 DPRVKERKKP GQEGARRKFT WKKR

Type	Start	End	Confidence
Signal Peptide	1	20	0.69
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	384	0.99