YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114107861, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGELALNIN IKEPRWDQST FVGRAKHFFT VTDPRNILLP NDQLERSRQI VHDYRQGIVE  60
   61 PGLTEDELWR AKYVYDSAFH PDTGEKMILI GRMSAQVPMN MTITGCMMTF YRTTPAVVFW 120
  121 QWINQSFNAI VNYTNRSGDA PITVSQLGTA YVSATTGAVA TALGLNALTK RVSPLIGRFV 180
  181 PFAAVAAANC INIPLMRQRE LKYGIPVTDE NGNRIGESAN AAKQAITQVV VSRILMAAPG 240
  241 MAIPPFIMNT LEKKAFLKRF PWMSAPIQVG LVGFCLVFAT PLCCALFPQN SSMSVTRLEP 300
  301 ELQAKIKENS PGLARVYFNK GL

Type	Start	End	Confidence
Cytoplasmic	1	96	0.96
Transmembrane Helix	97	119	0.75
Non-Cytoplasmic	120	146	0.86
Transmembrane Helix	147	168	0.85
Cytoplasmic	169	174	0.82
Transmembrane Helix	175	196	0.70
Non-Cytoplasmic	197	228	0.65
Transmembrane Helix	229	248	0.77
Cytoplasmic	249	264	0.59
Transmembrane Helix	265	288	0.87
Non-Cytoplasmic	289	322	0.69