YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RRT8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGIELISH SQASHATYAN SMTLAEKGPQ RLKRQFKEHS SSKESNVSRW LKIFIRQFDI  60
   61 WFPETIPTMK VRYELLRKNF IKEIFNSRAF IYPFLGFYEV LTNPVYWKHI LLFAVCYALI 120
  121 FVTIAGLFYV TLVPLLVTWA ILLLGPLGVI LVHIQWILQT NVLTAFVCRT LVLTHITNQI 180
  181 FDISLVLQDQ DEFLNEVKVL PKPQKPHRKI DEPDAVRNFN TIKGSRIFKI PRLLFRMFFK 240
  241 VSNFTSLTLL SLIPIVGPIL ANQLMAPKRT FTYLQRYFLL KGFSKKQAKD FQYEHYASFI 300
  301 CFGMSAGLLE LIPFFTIVTI SSNTVGAAKW CTSLLKGERK KE

Type	Start	End	Confidence
Cytoplasmic	1	108	0.94
Transmembrane Helix	109	130	0.90
Non-Cytoplasmic	131	135	0.62
Transmembrane Helix	136	157	0.87
Cytoplasmic	158	237	0.85
Transmembrane Helix	238	261	0.83
Non-Cytoplasmic	262	305	0.81
Transmembrane Helix	306	331	0.69
Cytoplasmic	332	342	0.84