YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELTEAEKR RLLRERRQKK FSNGGASSRL NKITGQASSH LNAESPLDAP SAAKTTPPAS  60
   61 VHSATPDIKE DSNVAPQLDL LKQLAAMQGQ GTGKSTPQDS STPDLLSLLS SMNTGMPSAE 120
  121 GTPSFGQAAP AAPINQAALD YHDYLLNRLK AWTILVKWVF FLLPYLYLIT RPNSSVWPAY 180
  181 AFTQSAWFAP LRNPSNFTRI FATFEFLSIS IYYQLLKNVE HKSKIKNLQD TNKLVKLVSL 240
  241 VPEGVIPVAN LKGKLITLLQ YWDLLSMLIT DISFVLIVLG LLTYL

Type	Start	End	Confidence
Cytoplasmic	1	153	0.95
Transmembrane Helix	154	170	0.86
Non-Cytoplasmic	171	196	0.82
Transmembrane Helix	197	216	0.82
Cytoplasmic	217	260	0.86
Transmembrane Helix	261	283	0.89
Non-Cytoplasmic	284	285	0.72