YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCL002C
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVIVLQGLA GFLSIIAILC QKRYNKLHRS IYGLSYDLFL LDFVGNGLYL YCALHYCYSS  60
   61 LVREQLSQRF PLFYPLNDAR SIPISSFLIL KDFCVSCCCM MVLRQLYYYR STKHIYQGIS 120
  121 ITSIIIISVF LVLGIFTYGC SISNLPLKNS GKFGVFYLEH INYLWVMANL LKCFKYVPQM 180
  181 SINWMGCSTV GLSSKFALIS FLAESIDLLG RLVIPTNALF YEIPFNSTPF WVKLIQFVTY 240
  241 WSYFVKFSMF T

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.63
Transmembrane Helix	5	21	0.66
Cytoplasmic	22	37	0.64
Transmembrane Helix	38	57	0.68
Non-Cytoplasmic	58	83	0.73
Transmembrane Helix	84	107	0.74
Cytoplasmic	108	117	0.70
Transmembrane Helix	118	139	0.91
Non-Cytoplasmic	140	155	0.73
Transmembrane Helix	156	174	0.56
Cytoplasmic	175	181	0.57
Transmembrane Helix	182	203	0.62
Non-Cytoplasmic	204	228	0.58
Transmembrane Helix	229	245	0.57
Cytoplasmic	246	251	0.52