YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111023324, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDRSVKTT EALPPLVEPD AELSRDEVAR YSRHLIIPDV GMAGQKRLKN AKVLVIGAGG  60
   61 LGSPALLYLA AAGVGTLGIV EFDEVDMSNL QRQVIHGRSD VGRPKAESAR DSIREINDNV 120
  121 DVRLHEFRLE PDNAVELFEQ YDLILDGTDN FATRYLVNDA AVLAHKPYVW GSIYRFEGQA 180
  181 SVFWEDAPNG RGLNYRDLYP EAPPPGMVPS CAEGGVLGVL CASIGSIMAT EAVKLITGIG 240
  241 ESLLGRLMVY DALDMTYRTI TLRRDPARTP VTELIDYDAF CGVVSDEGQA AAAGSTITAT 300
  301 ELRDLLDSGK EIELIDVREP VEWDIVHLPG AVLIPKDRIL SGEALSELPQ NKPIVLHCKT 360
  361 GVRSAEALAA LKKAGFSDAT HLQGGVIAWA KQVDTSLPVY

Type	Start	End	Confidence
Cytoplasmic	1	52	0.84
Transmembrane Helix	53	74	0.78
Non-Cytoplasmic	75	400	0.92