YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111022960, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVPSLPKR GSDKDQRSGG KDPGPRIRIP TARAIVDCGV YVDGTRLPGK YTHQAAMAEV  60
   61 RKRGRGFVWV GLLAPDEGQM ESVAETFGLH ELMVEDAVHA HQRPKLERYD DVLFLVLRTV 120
  121 NYVPHESVAT ASEIVETGEI MVFVGADFVI TVRHGDHSPL ANVRHALEAN QERLALGPYA 180
  181 VLHAVADHVV DTYLEVTQAI EEDVDGMEEA VFSPRSSVAV EHIYLLKREI VELRKSVNPL 240
  241 SNPLLRLTRA PGNPVPKEIR RYFRDVLDHH TTVAERIAEY DEVLSSLVDA ALAKIAVQQN 300
  301 TDMRKISAWV AIAAVPTMIA GIYGMNFDNM PELHWQYGYH GVVFVIASVT VALFVTFRRN 360
  361 HWL

Type	Start	End	Confidence
Cytoplasmic	1	305	0.95
Transmembrane Helix	306	327	0.90
Non-Cytoplasmic	328	336	0.87
Transmembrane Helix	337	357	0.95
Cytoplasmic	358	363	0.86