YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPA1_STAAU
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKNIYSIR KLGVGIASVT LGTLLISGGV TPAANAAQHD EAQQNAFYQV LNMPNLNADQ  60
   61 RNGFIQSLKD DPSQSANVLG EAQKLNDSQA PKADAQQNNF NKDQQSAFYE ILNMPNLNEA 120
  121 QRNGFIQSLK DDPSQSTNVL GEAKKLNESQ APKADNNFNK EQQNAFYEIL NMPNLNEEQR 180
  181 NGFIQSLKDD PSQSANLLSE AKKLNESQAP KADNKFNKEQ QNAFYEILHL PNLNEEQRNG 240
  241 FIQSLKDDPS QSANLLAEAK KLNDAQAPKA DNKFNKEQQN AFYEILHLPN LTEEQRNGFI 300
  301 QSLKDDPSVS KEILAEAKKL NDAQAPKEED NNKPGKEDNN KPGKEDNNKP GKEDNNKPGK 360
  361 EDNNKPGKED NNKPGKEDGN KPGKEDNKKP GKEDGNKPGK EDNKKPGKED GNKPGKEDGN 420
  421 KPGKEDGNGV HVVKPGDTVN DIAKANGTTA DKIAADNKLA DKNMIKPGQE LVVDKKQPAN 480
  481 HADANKAQAL PETGEENPFI GTTVFGGLSL ALGAALLAGR RREL

Type	Start	End	Confidence
Signal Peptide	1	36	0.99
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	498	0.99
Transmembrane Helix	499	519	0.91
Cytoplasmic	520	524	0.89