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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PIGR_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSLFALLV TVFSGVSTQS PIFGPQDVSS IEGNSVSITC YYPDTSVNRH TRKYWCRQGA  60
   61 NGYCATLISS NGYLSKEYSG RASLINFPEN STFVINIAHL TQEDTGSYKC GLGTTNRGLF 120
  121 FDVSLEVSQV PEFPNDTHVY TKDIGRTVTI ECRFKEGNAH SKKSLCKKRG EACEVVIDST 180
  181 EYVDPSYKDR AILFMKGTSR DIFYVNISHL IPSDAGLYVC QAGEGPSADK NNADLQVLEP 240
  241 EPELLYKDLR SSVTFECDLG REVANDAKYL CRKNKETCDV IINTLGKRDP AFEGRILLTP 300
  301 RDDNGRFSVL ITGLRKEDAG HYQCGAHSSG LPQEGWPVQA WQLFVNEEST IPNSRSVVKG 360
  361 VTGGSVAIVC PYNPKESSSL KYWCHWEADE NGRCPVLVGT QALVQEGYEG RLALFDQPGS 420
  421 GAYTVILNQL TTQDSGFYWC LTDGDSRWRT TIELQVAEAT KKPDLEVTPQ NATAVIGETF 480
  481 TISCHYPCKF YSQEKYWCKW SNDGCHILPS HDEGARQSSV SCDQSSQIVS MTLNPVKKED 540
  541 EGWYWCGVKE GQVYGETTAI YVAVEERTRG SPHINPTDAN ARAKDAPEEE AMESSVREDE 600
  601 NKANLDPRLF ADEREIQNAG DQAQENRASG NAGSAGGQSG SSKVLFSTLV PLGLVLAVGA 660
  661 VAVWVARVRH RKNVDRMSIS SYRTDISMGD FRNSRDLGGN DNMGATPDTQ ETVLEGKDEI 720
  721 ETTTECTTEP EESKKAKRSS KEEADMAYSA FLFQSSTIAA QVHDGPQEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle