YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110821612, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADTRREQR STEVPVTADP ARDHRRREVL VTALGYAAMV AVLVMVALPL YWIVMTSFKD  60
   61 RPDVYTLPVT WWPGTFHPEN YSEATTSVPF WTFLRNSVII TGVLAVVKFA LGVFSAYGLV 120
  121 FLRFPGKNVV FLGIIAALMV PNQITVISNY ALVAEWGWRN SFHGIIVPLA GVAFGTFLMR 180
  181 NHFLSIPTEI VEAARMDGAG HFGLLWRVIL PVSGPTMVAF AIITVVTEWN EYLWPFLMAD 240
  241 DASVAPLPVG LTQLQNNDGL TNWGPVMAGT VLTMLPILVV FLVLQRHMIK GLTSGAVKG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	53	0.90
Non-Cytoplasmic	54	97	0.96
Transmembrane Helix	98	121	0.92
Cytoplasmic	122	128	0.88
Transmembrane Helix	129	152	0.88
Non-Cytoplasmic	153	161	0.87
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	203	0.97
Transmembrane Helix	204	226	0.96
Non-Cytoplasmic	227	262	0.96
Transmembrane Helix	263	284	0.91
Cytoplasmic	285	299	0.92